The new protein topology graph library web server
Schäfer, T., Scheck, A., Bruneß, D., May, P., & Koch, I. (2016). The new protein topology graph library web server. Bioinformatics, 32 3, 474-6 .
CV
Education
- B.Sc. Bioinformatik, Goethe Universität, 2015
Bioinformatic Analysis of Protein Structure Complexes Using Graph-theoretical Methods - M.Sc. Bioinformatik, Goethe Universität, 2018
Bioinformatic Network Analysis and Comparison of the Ubiquitinome and Phosphoproteome of Salmonella-infected Cells - Ph.D Informatik, Goethe Universität, 2024 (expected)
Work experience
- 11/2023 (ongoing) Transfer Officer @ hessian.AI, Technische Hochschule Mittelhessen, Friedberg
- tba
- 11/2019 – 11/2023 Research Assistant, Technische Hochschule Mittelhessen, Friedberg
- Supervision of students for Bachelor’s and Master’s theses
- Supervision of students during internships
- Planning and implementation of the “Applied Natural Language Processing” module
- Coordination of the LOEWE3 project “Transfer Learning for Medical Diagnosis (TLDia)”
- Research and development in LOEWE3 project
- 10/2017 – 11/2019 Developer, 2VizCon GmbH, Frankfurt am Main
- Web-based app front-end development in JS and HTML
- Design and development of various backend solutions in PHP in conjunction with MySQL, Neo4j and CouchDB databases
- Design and development of interfaces between customer applications and external APIs (Salesforce, SAP)
- Processing and analysing customer-specific data
- Further development of the company’s own infrastructure
- Linux server administration and log file analysis
- Support in project management
- Coordination of working students
- Training of customers
- 05/2016 – 09/2017 Working Student, 2VizCon GmbH, Neu-Isenburg
- Web-based app front-end development
- Maintenance and further development of various backend solutions
- Maintenance of app content and texts
Publications
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Interacting Spider Webs
Rieser, J., Bruneß, D., Ackermann, J., Koch, I. (2020). Interacting Spider Webs. In: Matthäus, F., Matthäus, S., Harris, S., Hillen, T. (eds) The Art of Theoretical Biology. Springer
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Term Extraction from Medical Documents Using Word Embeddings
Bay, M., Bruneß, D., Herold, M., Schulze, C., Guckert, M., & Minor, M. (2020). Term Extraction from Medical Documents Using Word Embeddings. 2020 6th IEEE Congress on Information Science and Technology (CiSt), 328-333.
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An Ontology-based transfer learning method improving classification of medical documents.
Bruneß, D., Bay, M., Schulze, C., Guckert, M., & Minor, M. (2022). An Ontology-based transfer learning method improving classification of medical documents. 2022 21st IEEE International Conference on Machine Learning and Applications (ICMLA), 407-412.
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A Hybrid AI-Based Method for ICD Classification of Medical Documents
Bruneß, D., Bay, M., Schulze, C., Guckert, M., & Minor, M. (2023). A Hybrid AI-Based Method for ICD Classification of Medical Documents. Healthcare Transformation with Informatics and Artificial Intelligence, 305, 1-4..
Talks
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A Hybrid AI-based Method for ICD Classification of Medical Documents
Conference Talk at ICIMTH '23 Conference, Athens, Greece